* using log directory 'd:/Rcompile/CRANpkg/local/2.15/cit.Rcheck' * using R Under development (unstable) (2012-01-05 r58059) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'cit/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cit' version '1.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'cit' can be installed ... ERROR Installation failed. The installation logfile: * installing *source* package 'cit' ... ** package 'cit' successfully unpacked and MD5 sums checked ** libs *** arch - i386 make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/2.15/cit/src-i386' g++ -I"d:/Rcompile/recent/R/include" -DNDEBUG -I"d:/Rcompile/CRANpkg/extralibs215/local215/include" -O2 -Wall -mtune=core2 -c cit_v5.cpp -o cit_v5.o gsl-config: not found g++ -shared -s -static-libgcc -o cit.dll tmp.def cit_v5.o -Ld:/Rcompile/CRANpkg/extralibs215/local215/lib/i386 -Ld:/Rcompile/CRANpkg/extralibs215/local215/lib -Ld:/Rcompile/recent/R/bin/i386 -lR gsl-config: not found cit_v5.o:cit_v5.cpp:(.text+0xf72): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0xf86): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0xf94): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x103b): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x1069): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x1177): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x11a1): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x11cb): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1205): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1241): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1285): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1297): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x12af): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x12ec): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x12fa): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1308): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1316): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1334): undefined reference to `gsl_stats_tss' cit_v5.o:cit_v5.cpp:(.text+0x1379): undefined reference to `gsl_cdf_fdist_Q' cit_v5.o:cit_v5.cpp:(.text+0x13cc): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1438): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x1452): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1487): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x14ad): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x14de): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x14f0): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1508): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1545): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1553): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1561): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x156f): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x157d): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x15bc): undefined reference to `gsl_cdf_fdist_Q' cit_v5.o:cit_v5.cpp:(.text+0x1604): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1658): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1670): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x168e): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x16bd): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x16d7): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x16f3): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1730): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x173e): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x174c): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x175a): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1768): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1780): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x17ea): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x1804): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1839): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x185f): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1890): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x18a2): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x18ba): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x18f7): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1905): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1913): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1921): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x192f): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x195f): undefined reference to `gsl_cdf_fdist_Q' cit_v5.o:cit_v5.cpp:(.text+0x19a7): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x19fb): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1a13): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x1a31): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1a60): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1a7a): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1a96): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1ad3): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1ae1): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1aef): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1afd): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1b0b): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1b39): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1b51): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1b6f): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1bac): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1bba): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1bc8): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1c1e): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x1c46): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x1cad): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x1d09): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1d17): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1e04): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x1e39): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1e92): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1eaa): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x1ec8): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x1ef7): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1f11): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1f2d): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x1f6a): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x1f78): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x1f86): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1f94): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x1fa2): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x1fba): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x2028): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x2042): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x2077): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x209d): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x20ce): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x20e0): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x20f8): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x2135): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x2143): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x2151): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x215f): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x216d): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x230e): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x231c): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x232a): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x2338): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x2550): undefined reference to `gsl_vector_set' cit_v5.o:cit_v5.cpp:(.text+0x2583): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x25d7): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x25ef): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x260d): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x263c): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x2656): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x2672): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x26af): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x26bd): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x26cb): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x26d9): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x26e7): undefined reference to `gsl_vector_free' cit_v5.o:cit_v5.cpp:(.text+0x26ff): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x2769): undefined reference to `gsl_matrix_get' cit_v5.o:cit_v5.cpp:(.text+0x2783): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x27b8): undefined reference to `gsl_vector_get' cit_v5.o:cit_v5.cpp:(.text+0x27de): undefined reference to `gsl_matrix_set' cit_v5.o:cit_v5.cpp:(.text+0x280f): undefined reference to `gsl_vector_alloc' cit_v5.o:cit_v5.cpp:(.text+0x2821): undefined reference to `gsl_matrix_alloc' cit_v5.o:cit_v5.cpp:(.text+0x2839): undefined reference to `gsl_multifit_linear_alloc' cit_v5.o:cit_v5.cpp:(.text+0x2876): undefined reference to `gsl_multifit_linear' cit_v5.o:cit_v5.cpp:(.text+0x2884): undefined reference to `gsl_multifit_linear_free' cit_v5.o:cit_v5.cpp:(.text+0x2892): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x28a0): undefined reference to `gsl_matrix_free' cit_v5.o:cit_v5.cpp:(.text+0x28ae): undefined reference to `gsl_vector_free' collect2: ld returned 1 exit status make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/2.15/cit/src-i386' ERROR: compilation failed for package 'cit' * removing 'd:/Rcompile/CRANpkg/lib/2.15/cit'