* using log directory 'd:/Rcompile/CRANpkg/local/2.15/geneListPie.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'geneListPie/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'geneListPie' version '1.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... NOTE As from R 2.14.0 all packages need a namespace. One will be generated on installation, but it is better to handcraft a NAMESPACE file: R CMD build will produce a suitable starting point. CRAN requires a NAMESPACE file for all submissions. * checking whether package 'geneListPie' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress goslim.human.BP.RData 26Kb 23Kb xz goslim.human.CC.RData 77Kb 66Kb bzip2 goslim.human.MF.RData 58Kb 36Kb xz goslim.human.all.RData 163Kb 131Kb bzip2 goslim.mouse.BP.RData 31Kb 21Kb xz goslim.mouse.CC.RData 51Kb 36Kb xz goslim.mouse.MF.RData 58Kb 36Kb xz goslim.mouse.all.RData 142Kb 78Kb xz goslim.rat.BP.RData 22Kb 19Kb xz goslim.rat.CC.RData 72Kb 60Kb bzip2 goslim.rat.MF.RData 71Kb 60Kb bzip2 goslim.rat.all.RData 163Kb 123Kb bzip2 goslim.yeast.BP.RData 13Kb 9Kb xz goslim.yeast.CC.RData 25Kb 17Kb xz goslim.yeast.MF.RData 20Kb 14Kb xz goslim.yeast.all.RData 57Kb 35Kb xz kegg2.5.generic.RData 25Kb 22Kb xz * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK WARNING: There was 1 warning. NOTE: There was 1 note. See 'd:/Rcompile/CRANpkg/local/2.15/geneListPie.Rcheck/00check.log' for details.